Action.001: GRS LinkOut Implementation

From Genomic Standards Consortium

[edit] Action

Each data provider included in the GRS initiative is to register separately with NCBI LinkOut.

[edit] Initiation Date

3rd April 2008

[edit] Completion Date

[edit] People

• Ryan Farris
• Dawn Field
• Tanya Gray
• Lynn Schriml
• James Cole
• Peter Sterk
• Rob Edwards
• David Ussery
• Peter Dawyndt
• Bart van Brabant
• Nikos Kyrpides

[edit] Co-ordinator / Contact

• curator@ceh.ac.uk

[edit] Data Provider - Contacts

• Genome Catalogue - Dawn Field
• Genomes Online Database GOLD - Nikos Kyrpides
• Straininfo.net - Peter Dawyndt
• RDP - Ryan Farris James Cole
• Genome Reviews - Peter Sterk
• SEED - Rob Edwards
• Genome Atlas David Ussery
• SILVA - Frank Oliver Glockner Katrin Knittel
• IMG Krishna Palaniappan Victor M. Markowitz
• CMR
• Gemina - Lynn Schriml

[edit] Progress Report

[edit] Status report for Data Providers

[edit] Genome Catalogue

[edit] Genomes Online Database GOLD

Nikos Kyrpides contacted on 8 April 2008 via curator account

[edit] Straininfo.net

8 April 2008 - emailed Peter Dawyndt via curator account

[edit] RDP

LinkOut links are now available.

http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=genomeprj&id=301&cmd=llinks

[edit] Genome Reviews

9 April 2008

update from Peter Sterk : ... should be able to do the linkout registration on Friday when ... the new Genome Reviews database ready.

8 April 2008

email sent to Peter Sterk via curator account

[edit] SEED

8 April 2008 - email sent to Rob Edwards via curator account

[edit] Genome Atlas

8 April 2008 - email to David Ussery via curator account

[edit] SILVA

9 April 2008

reply from Frank ...we are working on it and according to my experts we should be able to finish it end of next week.

8 April 2008

email to Frank Oliver Glockner via curator

[edit] IMG

8 April 2008 - email to Victor M. Markowitz via curator account

[edit] CMR

8 April 2008 - message sent via contact form on CMR web site

[edit] Gemina

8 April 2008 Gemina is registered with LinkOut - emailed Lynn Schriml for update on availability, via curator account

reply from Lynn: files published to the Gemina FTP site at LinkOut late last week. Kathy emailed me and said that they are now in the production queue and that there is about a 48 hour turn around time until the links are public. They should be viewable shortly. I have about 110 links.