EnvO Manchester workshop
From Genomic Standards Consortium
Quick Links
- Go to the Main GSC Wiki page
- Workshops:
- Inaugural EnvO Workshop
- Second EnvO CSHL workshop
- Our sibling project page Gaz
- Read the Meeting notes
On this page: |
[edit] Third Environment Ontology Workshop at The University of Manchester, March 13-15, 2008
[edit] EnvO project
Developing an ontology for describing the environment of organisms / biological samples
[edit] Workshop Logistics
[edit] Useful Stuff to Print Out Before You Leave!
- Print out this page!
- Map for locating the Days Hotel / Manchester Conference Centre, including directions from Manchester Piccadilly Train Station (10 mins walk) (link to map)
- The University of Manchester campus map.
- Building Keys:
- Days Inn Hotel, Manchester conference Centre (Number 11).
- Kilburn Building, School of Computer Science (Number 39).
- Building Keys:
[edit] Dates
Thursday 13th to Saturday 15th, March, 2008
[edit] Meeting Location
The workshop will take place in the Atlas Suite in the School of Computer Science, at The University of Manchester UK.
The full address of the venue is :
School of Computer Science,
University of Manchester,
Kilburn Building,
Oxford Road,
Manchester, M13 9PL.
NB: The entrance to the Kilburn Building is on the first floor level (something that confuses many visitors!). Climb the wide brick steps, located next to the precinct centre bridge that passes over Oxford road, then follow the signs to the Kilburn Building. I will post signs on the doors directing you towards the Atlas Suite.
[edit] Travel
- Please buy your own tickets and arrange to arrive by March 13th 2008.
- Everyone is expected to stay up to the end of the meeting on Day-3, therefore, please make your arrangements accordingly.
[edit] Travel by Air
Manchester Airport is one of the largest and busiest in the country. It is located about 10 miles (16km) south of the city centre, about 30 minutes from the university.
The airport has a number of transport links to the city:
- Train - The airport's two terminals are linked directly to the city centre by a fast, frequent 24 hour train link to both Piccadilly and Oxford Road stations.
- Taxi - A taxi from the airport to the University will cost approximately £15.
- Bus - Local buses also run to the Oxford Road and Sackville Street areas of the campus.
Most major airlines fly to and from Manchester. For more information please visit the Manchester Airport Website
[edit] Further Travel Info
The Manchester University Maps & Travel pages have lots of useful information about getting to/from the University.
[edit] Accommodation
Accommodation for delegates has been arranged at the Manchester Conference Centre. Information about getting to the centre can be found here.
Days Hotel Manchester, Weston Building, Sackville Street, Manchester, M1 3BB, UK Tel: +44 161 955 8400
[edit] Eating Out
Initial reservations have been made at three different restaurants in Manchester over the course of the workshop.
- Please indicate your availability for each of the evenings here.
- Wed 12th - 7.30pm. East-Z-East. Punjabi Restaurant, very close to the hotel.
- http://www.eastzeast.com/homepage.html
- Note: For those of you arriving on Wednesday evening, there has been a suggestion to meet up before going to the restaurant at the Lass O'Gowrie pub at 6pm. It's very close to the hotel and I'm sure the receptionist will be able to point you in the right direction.
- Thurs 13th - 7.30pm. Sam's Chop House. Classic British food in victorian surroundings.
- http://samsmanchester.thevictorianchophousecompany.com/
- NB: As we are a large group, Sam's Chophouse has requested that we provide them with menu choices 24 hrs in advance:
- Fri 14th - 7.30pm. Yang Sing. Manchester's most famous Cantonese restaurant.
[edit] Meeting contacts
For questions on the travel, local transportation and accommodation please contact Norman Morrison by email or telephone:
Email: norman.morrison AT manchester.ac.uk Phone: +44 161 275 0646
[edit] Expenses
IMPORTANT: Please include all original receipts/invoices/tickets and make a copy for your records (just in case anything gets lost). Credit card receipts will not be accepted. Please submit all forms within one month to the following address:
EnvO III Workshop
FAO: Caroline Wills-Wright
CEH Oxford
Mansfield Rd
Oxford, UK. OX1 3SR
An electronic copy of the expenses claim form can be found here: Expenses Claim Form
[edit] Participants
[edit] Participants unable to attend
| Peter Dawyndt | StrainInfo Bioportal / Ghent University |
| Aaron Gussman | Institute for Genome Sciences, Baltimore School of Medicine |
| Pankaj Jaiswal | Gramene Database / Dept. of Plant Breeding and Genetics, Cornell University, Ithaca, NY |
| Nikos Kyrpides | DOE JGI / Lawrence Berkeley National Laboratory |
| Joanne Luciano | MITRE |
| Chris Mungall | Lawrence Berkeley National Laboratory |
| Sujeevan Ratnasingham | University of Guelph / Barcode of Life Data Systems |
| Phillippe Rocca-Serra | European Bioinformatics Institute |
| Alan Ruttenberg | |
| Robert Stevens | School of Computer Science, The University of Manchester, UK |
| Tatiana Tatusova | National Center for Biotechnology Information |
| Jeff White | USDA-ARS |
[edit] Program
[edit] Workshop program
Day 1 - Thursday 13th March 2008. |
|
Workshop Opens |
|
10:00 |
Registration & Coffee |
Session I: Updates & Activities |
|
10:30 - 10:40 |
Welcome, background and scope of the workshop. |
| 10:40 - 10:50 | Review of actions from previous meeting. Suzanna Lewis - Lawrence Berkeley National Laboratory. |
| Ontology updates & activities | |
| 10:50 - 11:00 | Gaz |
| 11:00 - 11:10 | EnvO Norman Morrison - NEBC & University of Manchester. |
User updates & Activities |
|
| 11:10 - 11:20 | Gemina Project |
| 11:20 - 11:30 | Genomic Standards Consortium (GSC) |
| 11:30 - 11:45 | Coffee Break |
| 11:45 - 11:55 | Habitat-Lite |
| 11:55 - 12:05 | Encyclopedia of Life Project Neil Sarkar - Marine Biological Laboratory, Woods Hole. |
12:05 - 12:15 |
StrainInfo Portal |
| 12:15 - 12:30 | Discussion (Any other updates & activities) |
12:30 - 13:30 |
Lunch |
Session II: Introductory presentations & background from new members |
|
| 13:30 - 13:45 | NERC DataGrid Vocabulary Server: an embryonic ontology server. |
| 13:45 - 14:00 | EUNIS: European nature information system database. |
14:00 - 14:15 |
Geospatial Change. |
| 14:15 - 14:30 | Landscape Genomics: Making the link between environmental factors, trypanosomiasis and cattle. |
14:30 - 15:00 |
Discussion |
15:00 - 15:15 |
Coffee |
Session III: Workshop Planning |
|
| 15:15 - 18:00 | An agenda driven by adopters / users of EnvO and Gaz: - For what purpose / function have you been using EnvO/Gaz? |
18:00 |
Close |
Day 2 - Friday 14th March 2008. |
|
09:00 |
Coffee |
Session IV: Technical Issues |
|
09:15 -12:30 |
Write access to the ontology. Who? How? Including, guidance on normal operating procedures. What sort of searches do we need to support? What mechanisms are available for requesting changes (and logging them)? Are they working? Can they be improved? |
12:30 - 13:30 |
Lunch |
Session V: TBA (User driven, action for end of day 1) |
|
13:30 - 15:00 |
TBA (see above) |
15:00 - 15:15 |
Coffee |
Session VI: Where do we go from here? |
|
15:15 - 18:00 |
Mechanisms for collaboration Exposure: ISMB poster abstract.Future funding |
18:00 |
Close |
Day 3 - Saturday 15th March 2008. |
||
Session VII: Development of Environmental & Gaz Ontologies |
||
09:00 |
Coffee |
|
9:15 |
Break out group 1 |
Break out group 2 |
10:40 |
Coffee |
|
11:00 |
Break out group 1 |
Break out group 2 *Dedicated session: Future Funding* |
13:00 |
Lunch |
|
14:00 |
Wrap up: Review of Actions |
|
15:00 |
Formal close of workshop and Coffee |
|
15:30 |
Departures |
|
[edit] Meeting Documentation
[edit] Post-Meeting Curation Priorities
[Prioritized Curation Tasks for EnvO and Gaz]
[edit] Links of interest
[edit] EnvO ontology
[edit] GAZ ontology
[edit] Phenote annotation tool
[edit] EnvO mailing list
[edit] Previous meetings
[edit] EnvO I
- EnvO Workshop held at Oxford, UK (August 29-31, 2007)
- Workshop Report: .doc format (Image:EnvO Meeting Report Final.doc) and .pdf format (Image:1st EnvO Workshop report final.pdf)
[edit] EnvO II
- EnvO_CSHL_workshop held at Cold Spring Harbor, US (November 14-16, 2007)


