Protein Information Resource - ID Mapping
From Genomic Standards Consortium
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[edit] Introduction
Protein Information Resource ID Mapping http://pir.georgetown.edu/pirwww/
From [1]:
The Protein Information Resource (PIR), located at Georgetown University Medical Center (GUMC), is an integrated public bioinformatics resource to support genomic and proteomic research, and scientific studies (Wu et al., 2003).
[edit] Identifier Mapping
Function exists to map a batch of IDs in the iProClass database: http://pir.georgetown.edu/pirwww/search/idmapping.shtml
[edit] Identifiers Included in Mapping
[edit] Query using IDs from following resources:
- -Sequence------------
- FLYID - FLY ID
- GBEMBLDDBJ - GenBank AC
- GEACCS - Genpept AC
- GIIDS - GI Number
- IPI - IPI ID
- MGIID - MGI ID
- NFID - NREF ID
- PIIDS - PIR-PSD ID
- PIACCS - PIR-PSD AC
- REACCS - Refseq AC
- SGDID - SGD ID
vTIGRID - TIGR ID
- UNIPARC - UniParc AC
- UNIPROTACCS - UniProtKB AC
- UNIPROTIDS - UniProtKB ID
- -Classification--
- BLOCKS - BLOCKS ID
- COG - COG ID
- PFAM - Pfam ID
- SUPFAM - PIRSF ID
- PRINTS - PRINTS ID
- PROSITE - PROSITE ID
- UNIREF50 - UniRef50
- UNIREF90 - UniRef90
- UNIREF100 - UniRef100
- -Function/Feature--
- BINDID - BIND ID
- ECNUM - EC Number
- GO - GO ID
- PATHWAY - KEGG Pathway ID
- RESID - RESID ID
- -Organism--
- TAXGRPID - Taxon Group ID
- TAXID - Taxon ID
- -Miscellaneous--
- ENTREZGENEID - Entrez Gene ID
- OMMIMID - OMIM ID
- PDIDS - PDB ID
- BIBLIO - PubMed ID
- GENENAME_TXT - Gene Name
[edit] End point of Mapping
With the web query interface, the identifiers listed above can be mapped to UniprotKB ID and AC
[edit] Web Query Interface
Web query interface available at:
http://pir.georgetown.edu/pirwww/search/idmapping.shtml
[edit] Identifier Mapping Availability
The PIR ID Mapping File is available at:
