Telecon: 2008 05 02

From Genomic Standards Consortium

This telecon is dedicated to discuss the integration of Habitat-Lite and GCDML.

[edit] Time & Call-in Number

http://www.timeanddate.com/worldclock/fixedtime.html?month=5&day=2&year=2008&hour=16&min=0&sec=0&p1=136

Please use the numbers below to call in:

In the UK: Dial in local number 0870 240 7821

In Germany dial in 00 44 808 100 5145

In the US: dial in 011 44 808 100 5145

Participant Code 45707 340 then #

[edit] Topics

• Discuss answer to the mail concerning Habitat-Lite see http://sourceforge.net/mailarchive/message.php?msg_name=0275BF0612305843B7D58B67C35B3CC972437E%40IMCSRV8.MITRE.ORG
  • Wrote Proposal.004:SAWSDL_for_Semantic_Integration, this should also serve as first documentation
  • In answer to the above mail:

<nasReports>
   <_Report>
       <gcatID />
       <studyData><extension /></studyData>
       
       <originalSample>
           <physicalMaterial>
              
              <materialType>sediment</materialType>
              
              <samplingTime />
              <_SampleLocation><extension /><_SampleLocation>
                
                <marineHabitat description="hydrothermal vent">
                    <waterBody/>
                    <sediment/>
                </_marineHabitat>
                
           <physicalMaterial>
       </originalSample>
       
       <isolate><extension /></isolate>
       <dnaExtract><extension /></dnaExtract>
       <dnaLibrary><extension /></dnaLibrary>
       <sequencing><extension /></sequencing>
       <extension />
   </_Report>
</nasReports>

Where e.g. the "description" attribute of marineHabitat could be defined in XML Schema as follows:

<simpleType name="marineHabitatDescriptionType">
  <restriction base="string">
    <enumeration value="hydrothermal vent" modelReference="uri to habitat lite and uri to EnvO"/>
    <enumeration value="whale fall" modelReference="empty cause not in either ontology (did not check it)"/>
  </restriction>
</simpleType>

• Concept of MIGS only reports
• Misc